Type: Package
Package: ggNetView
Title: Reproducible and Deterministic Network Analysis and Visualization
Version: 0.1.0
Authors@R: c(
    person("Yue", "Liu", , "yueliu@iae.ac.cn", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-6180-8068")),
    person("Chao", "Wang", , "cwang@iae.ac.cn", role = "aut"))
Description: Provides a unified, reproducible framework for analyzing and
    visualizing complex biological, ecological, and microbial association
    networks. Includes tools for building correlation and co-occurrence
    networks (e.g., 'WGCNA', 'SpiecEasi', 'SparCC'), computing topological
    metrics, performing module-level analyses, and rendering deterministic
    layouts based on 'ggraph' and 'ggplot2'. The package emphasizes
    reproducibility, modularity, and publication-quality figures.
License: GPL (>= 3)
Depends: 
    R (>= 4.2)
LinkingTo: 
    Rcpp,
    RcppArmadillo
Imports:
    boot,
    dplyr,
    FNN,
    future,
    future.apply,
    ggforce,
    ggnewscale,
    ggplot2,
    ggraph,
    ggrepel,
    grid,
    Hmisc,
    huge,
    igraph,
    magrittr,
    MASS,
    Matrix,
    methods,
    patchwork,
    progressr,
    psych,
    purrr,
    qgraph,
    Rcpp,
    readr,
    rlang,
    scales,
    scatterpie,
    stats,
    stringr,
    tibble,
    tidygraph,
    tidyr,
    utils,
    vegan,
    VGAM,
    WGCNA
Suggests:
    devtools,
    dynamicTreeCut,
    influential,
    knitr,
    rmarkdown,
    RobustRankAggreg,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Config/testthat/edition: 3
URL: https://github.com/Jiawang1209/ggNetView, https://jiawang1209.github.io/ggNetView/
BugReports: https://github.com/Jiawang1209/ggNetView/issues
