Metrics
This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| VARIANT_TYPE | The type of the event (i.e. either SNP or INDEL) |
| TRUTH_SAMPLE | The name of the 'truth' sample |
| CALL_SAMPLE | The name of the 'call' sample |
| TP_COUNT | The TP (true positive) count across all variants |
| TN_COUNT | The TN (true negative) count across all variants |
| FP_COUNT | The FP (false positive) count across all variants |
| FN_COUNT | The FN (false negative) count across all variants |
| EMPTY_COUNT | The empty (no contingency info) count across all variants |
See also General Documentation | Tool Docs Index Tool Documentation Index | Support Forum
GATK version 4.6.2.0 built at Sun, 13 Apr 2025 13:21:43 -0400.