IlluminaPhasingMetrics

Metrics

Category Metrics

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Overview

Metrics for Illumina Basecalling that stores median phasing and prephasing percentages on a per-template-read, per-lane basis. Phasing refers to the fraction of molecules that fall behind or jump ahead (prephasing) during a read cycle. For each lane/template read # (i.e. FIRST, SECOND) combination we will store the median values of both the phasing and prephasing values for every tile in that lane/template read pair. @author jgentry

This table summarizes the values that are specific to this metric.

Metric	Summary
LANE	Illumina flowcell lane number
TYPE_NAME	Defines an Illumina template read number (first or second)
PHASING_APPLIED	Median phasing value across all tiles in a lane, applied to the first and second template reads
PREPHASING_APPLIED	Median pre-phasing value across all tiles in a lane, applied to the first and second template reads

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