Metrics
This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| LANE | The lane for which the metrics were calculated. |
| MOLECULAR_BARCODE_SEQUENCE_1 | The barcode sequence for which the metrics were calculated. |
| MOLECULAR_BARCODE_NAME | The barcode name for which the metrics were calculated. |
| TOTAL_BASES | The total number of bases assigned to the index. |
| PF_BASES | The total number of passing-filter bases assigned to the index. |
| TOTAL_READS | The total number of reads assigned to the index. |
| PF_READS | The total number of passing-filter reads assigned to the index. |
| TOTAL_CLUSTERS | The total number of clusters assigned to the index. |
| PF_CLUSTERS | The total number of PF clusters assigned to the index. |
| MEAN_CLUSTERS_PER_TILE | The mean number of clusters per tile. |
| SD_CLUSTERS_PER_TILE | The standard deviation of clusters per tile. |
| MEAN_PCT_PF_CLUSTERS_PER_TILE | The mean percentage of pf clusters per tile. |
| SD_PCT_PF_CLUSTERS_PER_TILE | The standard deviation in percentage of pf clusters per tile. |
| MEAN_PF_CLUSTERS_PER_TILE | The mean number of pf clusters per tile. |
| SD_PF_CLUSTERS_PER_TILE | The standard deviation in number of pf clusters per tile. |
See also General Documentation | Tool Docs Index Tool Documentation Index | Support Forum
GATK version 4.6.2.0 built at Sun, 13 Apr 2025 13:21:43 -0400.