Metrics
This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| CUSTOM_AMPLICON_SET | The name of the amplicon set used in this metrics collection run |
| AMPLICON_TERRITORY | The number of unique bases covered by the intervals of all amplicons in the amplicon set |
| ON_AMPLICON_BASES | The number of PF_BASES_ALIGNED that mapped to an amplified region of the genome. |
| NEAR_AMPLICON_BASES | The number of PF_BASES_ALIGNED that mapped to within a fixed interval of an amplified region, but not on a baited region. |
| OFF_AMPLICON_BASES | The number of PF_BASES_ALIGNED that mapped neither on or near an amplicon. |
| PCT_AMPLIFIED_BASES | The fraction of PF_BASES_ALIGNED that mapped to or near an amplicon, (ON_AMPLICON_BASES + NEAR_AMPLICON_BASES)/PF_BASES_ALIGNED. |
| PCT_OFF_AMPLICON | The fraction of PF_BASES_ALIGNED that mapped neither onto or near an amplicon, OFF_AMPLICON_BASES/PF_BASES_ALIGNED |
| ON_AMPLICON_VS_SELECTED | The fraction of bases mapping to regions on or near amplicons, which mapped directly to but not near amplicons, ON_AMPLICON_BASES/(NEAR_AMPLICON_BASES + ON_AMPLICON_BASES) |
| MEAN_AMPLICON_COVERAGE | The mean read coverage of all amplicon regions in the experiment. |
| FOLD_ENRICHMENT | The fold by which the amplicon region has been amplified above genomic background. |
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GATK version 4.6.2.0 built at Sun, 13 Apr 2025 13:21:43 -0400.