PSScoreMetrics

Metrics

Category Metrics

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Overview

Metrics that are calculated during the PathSeq scoring

This table summarizes the values that are specific to this metric.

Metric	Summary
MAPPED_READS	The number of non-host reads mapped to a pathogen
UNMAPPED_READS	The number of non-host reads that could not be mapped to a pathogen

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GATK version 4.6.2.0 built at Sun, 13 Apr 2025 13:21:43 -0400.