Keep only reads that contains a tag with value that agrees with parameters
This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.
| Argument name(s) | Default value | Summary | |
|---|---|---|---|
| Required Arguments | |||
| --read-filter-tag |
Look for this tag in read | ||
| Optional Tool Arguments | |||
| --read-filter-tag-comp |
0.0 | Compare value in tag to this value | |
| --read-filter-tag-op |
EQUAL | Compare value in tag to value with this operator. If T is the value in the tag, OP is the operation provided, and V is the value in read-filter-tag, then the read will pass the filter iff T OP V is true. | |
Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.
Look for this tag in read
R String null
Compare value in tag to this value
Float 0.0 [ [ -∞ ∞ ] ]
Compare value in tag to value with this operator. If T is the value in the tag, OP is the operation provided, and V is the value in read-filter-tag, then the read will pass the filter iff T OP V is true.
The --read-filter-tag-op argument is an enumerated type (Operator), which can have one of the following values:
Operator EQUAL
See also General Documentation | Tool Docs Index Tool Documentation Index | Support Forum
GATK version 4.6.2.0 built at Sun, 13 Apr 2025 13:21:43 -0400.