ReadNameReadFilter

Keep only reads with this read name

Category Read Filters

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Overview

Keep only reads with one of these readnames. Should you need to provide many readnames to keep, you can provide a newline separated .list file of readnames to keep.

Matching is done by case-sensitive exact match.

ReadNameReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s)	Default value	Summary
Required Arguments
--read-name		Keep only reads with this read name

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

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--read-name

Keep only reads with this read name

R Set[String]  []

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GATK version 4.6.2.0 built at Sun, 13 Apr 2025 13:21:43 -0400.