ValidAlignmentStartReadFilter

Keep only reads with a valid alignment start

Category Read Filters

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Overview

Keep only reads with a valid alignment start (POS larger than 0) or is unmapped.

See MappedReadFilter for criteria defining an unmapped read.

Additional references

See these additional references.

• MappedReadFilter

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GATK version 4.6.2.0 built at Sun, 13 Apr 2025 13:21:43 -0400.